Make sure in WHM clamav is up to date as can be ( WHM/cPanel always seem to lag behind a bit ) by checking in WHM --> Manage Plugins --> and that "Install and keep updated" is check marked.
To invoke the clam scan help menu:
/usr/local/cpanel/3rdparty/bin/clamscan --helpTo scan everything in the home directory in one shot and have the found infections moved to a folder i.e. /root/infected/ ( the "infected" folder must be created prior to running the command )
/usr/local/cpanel/3rdparty/bin/clamscan -ir /home/ --exclude-dir='/home/virtfs|/home/.cpan|/home/.cpcpan' -l /var/log/clamscan.log --move=/root/infectedTo scan everything in just the /public_html/ folders in one shot and have the found infections moved to a folder i.e. /root/infected/ ( the "infected" folder must be created prior to running the command )
/usr/local/cpanel/3rdparty/bin/clamscan -ir /home/*/public_html --exclude-dir='/home/virtfs|/home/.cpan|/home/.cpcpan' -l /var/log/clamscan.log --move=/root/infectedIf you use scripts that expect ClamAV binaries in the
/usr/local/bin directory, create symbolic links with the following commands:ln -s /usr/local/cpanel/3rdparty/bin/clamscan /usr/local/bin/clamscanln -s /usr/local/cpanel/3rdparty/bin/freshclam /usr/local/bin/freshclam
